PUBLICATIONS
Tate A.J.*, Brown, K.C.*, and Montgomery T.A. (2023). tiny-count: a counting tool for hierarchical classification and quantification of small RNA-seq reads with single-nucleotide precision. Bioinformatics Advances. View
Cialek C.A., Galindo G., Morisaki T., Zhao N., Montgomery T.A., and Stasevich T.J. (2022). Imaging translational control by Argonaute with single-molecule resolution in live cells. Nature Communications. View
Montgomery B.E.*, Vijayasarathy T.*, Marks T.N., Cialek C.A., Reed K.J., and Montgomery T.A. (2021). Dual roles for piRNAs in promoting and preventing gene silencing in C. elegans. Cell Reports. View
Choi C.P., Tay R.J., Starostik M.R., Feng S., Moresco J.J., Montgomery B.E., Xu E., Hammonds M.A., Schatz M.C., Montgomery T.A., Yates J.R. 3rd, Jacobsen S.E., and Kim J.K. (2021). SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans. eLife. View
Reed, K.J. and Montgomery, T.A. (2020). Genes silenced down the generations, thanks to tails on messenger RNA. Nature 592. View
Manage, K.I., Rogers, A.K., Wallis, D.C., Uebel, C.J., Anderson, D.A., Nguyen, D.A.H., Arca, K., Brown, K.C., Rodrigues, R.J.C., de Albuquerque, B.F.M., Ketting, R.F., Montgomery, T.A., and Phillips, C.M. (2020). A Tudor domain protein, SIMR-1, promotes siRNA production at piRNA-targeted mRNAs in C. elegans. eLife. View
Reed, K.J., Svendsen, J.M., Brown, K.C., Montgomery, B.E., Marks, T.N., Vijayasarathy, T., Parker, D.M., Osborne Nishimura, E., Updike, D.L., and Montgomery, T.A. (2020). Widespread roles for piRNAs and WAGO-class siRNAs in shaping the germline transcriptome of Caenorhabditis elegans. Nucleic Acids Research. View
Svendsen, J.M., Reed, K.J., Vijayasarathy, T., Montgomery, B.E., Tucci, R.M., Brown, K.C., Marks, T.N., Nguyen, D.A.H., Phillips, C.M., and Montgomery, T.A. (2019). henn-1/HEN1 Promotes Germline Immortality in Caenorhabditis elegans. Cell Reports. View
Brown, K.C. and Montgomery, T.A. (2018). The long and short of lifespan regulation by Argonautes. PLoS Genetics. View
Svendsen, J.M. and Montgomery, T.A. (2018). piRNA rules of engagement. Developmental Cell. View.
Brown, K.C, Svendsen, J.M, Tucci, R.M, Montgomery, B.E., and Montgomery, T.A. (2017). ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline. Nucleic Acids Research. View
Weiser, N.E., Yang, D.X., Feng, S., Kalinava, N., Brown, K.C., Khanikar, J., Freeberg, M.A., Snyder, M.J., Csankovszki, G., Chan, R.C., Gu, S.G., Montgomery, T.A., Jacobsen, S.E., and Kim, J.K. (2017). MORC-1 integrates nuclear RNAi and transgenerational chromatin architecture to promote germline immortality. Developmental Cell. View
Brown K.C. and Montgomery T.A. (2017). Transgenerational inheritance: perpetuating RNAi. Current Biology. View
Phillips, C.M., Brown, K.C., Montgomery, B.E., Ruvkun, G., and Montgomery, T.A. (2015). piRNAs and piRNA-dependent siRNAs protect conserved and essential C. elegans genes from misrouting into the RNAi pathway. Developmental Cell. View
Phillips, C.M., Montgomery, B.E., Breen, P.C., Roovers, E.F., Rim, Y.S., Ohsumi, T.K., Newman, M.A., van Wolfswinkel, J.C., Ketting, R.F., Ruvkun, G., and Montgomery, T.A. (2014). MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation. Current Biology. View
Montgomery, T.A. and Ruvkun, G. (2013). MicroRNAs visit the ER. Cell. View
Shi, Z., Montgomery, T.A., Qi, Y., and Ruvkun, G. (2013). High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA and siRNA pathways in nematodes. Genome Research.
Carbonell, A., Fahlgren, N., Garcia-Ruiz, H., Gilbert, K.B., Montgomery, T.A., Nguyen, T., Cuperus, J.T., and Carrington, J.C. (2012). Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants. Plant Cell.
Phillips, C.M., Montgomery, T.A., Breen, P.C., and Ruvkun, G. (2012). MUT-16 promotes formation of perinuclear Mutator foci required for RNA silencing in the C. elegans germline. Genes & Development 26,1433-1444.
Montgomery, T.A., Rim, Y.S., Zhang, C., Dowen, R.H., Phillips, C.M., Fischer, S.E., and Ruvkun, G. (2012). PIWI associated siRNAs and piRNAs specifically require the Caenorhabditis elegans HEN1 ortholog henn-1. PLoS Genetics.
Zhang, C., Montgomery, T.A., Fischer, S.E., Garcia, M.D.A., Riedel, C.G., Fahlgren, N., Sullivan, C.M., Carrington, J.C., and Ruvkun, G. (2012). The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification. Current Biology.
Fischer, S.E., Montgomery, T.A., Zhang, C., Fahlgren, N., Breen, P.C., Hwang, A., Sullivan, C.M., Carrington, J.C., and Ruvkun, G. (2011). The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications. PLoS Genetics.
Zhang, C.*, Montgomery, T.A.*, Gabel, H.W.*, Fischer, S.E., Phillips, C.M., Fahlgren, N., Sullivan, C.M., Carrington, J.C., and Ruvkun, G. (2011). mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans. PNAS.
Cuperus, J.T.*, Carbonell, A.*, Fahlgren, N., Garcia-Ruiz, H., Burke, R.T., Takeda, A., Sullivan, C.M., Gilbert, S.D., Montgomery, T.A., and Carrington, J.C. (2010). Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nature Structural and Molecular Biology.
Cuperus, J.T., Montgomery, T.A., Fahlgren, N., Burke, R.T., Townsend, T., Sullivan, C.M., and Carrington, J.C. (2010). Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. PNAS.
Chitwood, D.H., Nogueira, F.T., Howell, M.D., Montgomery, T.A., Carrington, J.C., and Timmermans, M.C. (2009). Pattern formation via small RNA mobility. Genes & Development.
Fahlgren, N., Sullivan, C.M., Kasschau, K.D., Chapman, E.J., Cumbie, J.S., Montgomery, T.A., Gilbert, S.D., Dasenko, M., Backman, T.W., Givan, S.A., and Carrington, J.C. (2009). Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA.
Montgomery, T.A., Yoo, S.J., Fahlgren, N., Gilbert, S.D., Howell, M.D., Sullivan, C.M., Alexander, A., Nguyen, G., Allen, E., Ahn, J.H., and Carrington, J.C. (2008). AGO1-miR173 complex initiates phased siRNA formation in plants. PNAS.
Montgomery, T.A. and Carrington, J.C. (2008). Splicing and dicing with a SERRATEd edge. PNAS.
Montgomery, T.A., Howell, M.D., Cuperus, J.T., Li, D., Hansen, J.E., Alexander, A.L., Chapman, E.J., Fahlgren, N., Allen, E., and Carrington, J.C. (2008). Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell.
Liu, P.P., Montgomery, T.A., Fahlgren, N., Kasschau, K.D., Nonogaki, H., and Carrington, J.C. (2007). Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant Journal.
Fahlgren, N.*, Montgomery, T.A.*, Howell, M.D.*, Allen, E., Dvorak, S.K., Alexander, A.L., and Carrington, J.C. (2006). Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Current Biology.
* equal contribution
Cialek C.A., Galindo G., Morisaki T., Zhao N., Montgomery T.A., and Stasevich T.J. (2022). Imaging translational control by Argonaute with single-molecule resolution in live cells. Nature Communications. View
Montgomery B.E.*, Vijayasarathy T.*, Marks T.N., Cialek C.A., Reed K.J., and Montgomery T.A. (2021). Dual roles for piRNAs in promoting and preventing gene silencing in C. elegans. Cell Reports. View
Choi C.P., Tay R.J., Starostik M.R., Feng S., Moresco J.J., Montgomery B.E., Xu E., Hammonds M.A., Schatz M.C., Montgomery T.A., Yates J.R. 3rd, Jacobsen S.E., and Kim J.K. (2021). SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans. eLife. View
Reed, K.J. and Montgomery, T.A. (2020). Genes silenced down the generations, thanks to tails on messenger RNA. Nature 592. View
Manage, K.I., Rogers, A.K., Wallis, D.C., Uebel, C.J., Anderson, D.A., Nguyen, D.A.H., Arca, K., Brown, K.C., Rodrigues, R.J.C., de Albuquerque, B.F.M., Ketting, R.F., Montgomery, T.A., and Phillips, C.M. (2020). A Tudor domain protein, SIMR-1, promotes siRNA production at piRNA-targeted mRNAs in C. elegans. eLife. View
Reed, K.J., Svendsen, J.M., Brown, K.C., Montgomery, B.E., Marks, T.N., Vijayasarathy, T., Parker, D.M., Osborne Nishimura, E., Updike, D.L., and Montgomery, T.A. (2020). Widespread roles for piRNAs and WAGO-class siRNAs in shaping the germline transcriptome of Caenorhabditis elegans. Nucleic Acids Research. View
Svendsen, J.M., Reed, K.J., Vijayasarathy, T., Montgomery, B.E., Tucci, R.M., Brown, K.C., Marks, T.N., Nguyen, D.A.H., Phillips, C.M., and Montgomery, T.A. (2019). henn-1/HEN1 Promotes Germline Immortality in Caenorhabditis elegans. Cell Reports. View
Brown, K.C. and Montgomery, T.A. (2018). The long and short of lifespan regulation by Argonautes. PLoS Genetics. View
Svendsen, J.M. and Montgomery, T.A. (2018). piRNA rules of engagement. Developmental Cell. View.
Brown, K.C, Svendsen, J.M, Tucci, R.M, Montgomery, B.E., and Montgomery, T.A. (2017). ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline. Nucleic Acids Research. View
Weiser, N.E., Yang, D.X., Feng, S., Kalinava, N., Brown, K.C., Khanikar, J., Freeberg, M.A., Snyder, M.J., Csankovszki, G., Chan, R.C., Gu, S.G., Montgomery, T.A., Jacobsen, S.E., and Kim, J.K. (2017). MORC-1 integrates nuclear RNAi and transgenerational chromatin architecture to promote germline immortality. Developmental Cell. View
Brown K.C. and Montgomery T.A. (2017). Transgenerational inheritance: perpetuating RNAi. Current Biology. View
Phillips, C.M., Brown, K.C., Montgomery, B.E., Ruvkun, G., and Montgomery, T.A. (2015). piRNAs and piRNA-dependent siRNAs protect conserved and essential C. elegans genes from misrouting into the RNAi pathway. Developmental Cell. View
Phillips, C.M., Montgomery, B.E., Breen, P.C., Roovers, E.F., Rim, Y.S., Ohsumi, T.K., Newman, M.A., van Wolfswinkel, J.C., Ketting, R.F., Ruvkun, G., and Montgomery, T.A. (2014). MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation. Current Biology. View
Montgomery, T.A. and Ruvkun, G. (2013). MicroRNAs visit the ER. Cell. View
Shi, Z., Montgomery, T.A., Qi, Y., and Ruvkun, G. (2013). High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA and siRNA pathways in nematodes. Genome Research.
Carbonell, A., Fahlgren, N., Garcia-Ruiz, H., Gilbert, K.B., Montgomery, T.A., Nguyen, T., Cuperus, J.T., and Carrington, J.C. (2012). Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants. Plant Cell.
Phillips, C.M., Montgomery, T.A., Breen, P.C., and Ruvkun, G. (2012). MUT-16 promotes formation of perinuclear Mutator foci required for RNA silencing in the C. elegans germline. Genes & Development 26,1433-1444.
Montgomery, T.A., Rim, Y.S., Zhang, C., Dowen, R.H., Phillips, C.M., Fischer, S.E., and Ruvkun, G. (2012). PIWI associated siRNAs and piRNAs specifically require the Caenorhabditis elegans HEN1 ortholog henn-1. PLoS Genetics.
Zhang, C., Montgomery, T.A., Fischer, S.E., Garcia, M.D.A., Riedel, C.G., Fahlgren, N., Sullivan, C.M., Carrington, J.C., and Ruvkun, G. (2012). The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification. Current Biology.
Fischer, S.E., Montgomery, T.A., Zhang, C., Fahlgren, N., Breen, P.C., Hwang, A., Sullivan, C.M., Carrington, J.C., and Ruvkun, G. (2011). The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications. PLoS Genetics.
Zhang, C.*, Montgomery, T.A.*, Gabel, H.W.*, Fischer, S.E., Phillips, C.M., Fahlgren, N., Sullivan, C.M., Carrington, J.C., and Ruvkun, G. (2011). mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans. PNAS.
Cuperus, J.T.*, Carbonell, A.*, Fahlgren, N., Garcia-Ruiz, H., Burke, R.T., Takeda, A., Sullivan, C.M., Gilbert, S.D., Montgomery, T.A., and Carrington, J.C. (2010). Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nature Structural and Molecular Biology.
Cuperus, J.T., Montgomery, T.A., Fahlgren, N., Burke, R.T., Townsend, T., Sullivan, C.M., and Carrington, J.C. (2010). Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. PNAS.
Chitwood, D.H., Nogueira, F.T., Howell, M.D., Montgomery, T.A., Carrington, J.C., and Timmermans, M.C. (2009). Pattern formation via small RNA mobility. Genes & Development.
Fahlgren, N., Sullivan, C.M., Kasschau, K.D., Chapman, E.J., Cumbie, J.S., Montgomery, T.A., Gilbert, S.D., Dasenko, M., Backman, T.W., Givan, S.A., and Carrington, J.C. (2009). Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA.
Montgomery, T.A., Yoo, S.J., Fahlgren, N., Gilbert, S.D., Howell, M.D., Sullivan, C.M., Alexander, A., Nguyen, G., Allen, E., Ahn, J.H., and Carrington, J.C. (2008). AGO1-miR173 complex initiates phased siRNA formation in plants. PNAS.
Montgomery, T.A. and Carrington, J.C. (2008). Splicing and dicing with a SERRATEd edge. PNAS.
Montgomery, T.A., Howell, M.D., Cuperus, J.T., Li, D., Hansen, J.E., Alexander, A.L., Chapman, E.J., Fahlgren, N., Allen, E., and Carrington, J.C. (2008). Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell.
Liu, P.P., Montgomery, T.A., Fahlgren, N., Kasschau, K.D., Nonogaki, H., and Carrington, J.C. (2007). Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant Journal.
Fahlgren, N.*, Montgomery, T.A.*, Howell, M.D.*, Allen, E., Dvorak, S.K., Alexander, A.L., and Carrington, J.C. (2006). Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Current Biology.
* equal contribution